Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015948410.1_cds_XP_016489688.1_80186
CDS Infomation

[gene=LOC107809545] [db_xref=GeneID:107809545] [protein=shikimate O-hydroxycinnamoyltransferase-like] [protein_id=XP_016489688.1] [location=complement(join(22534..23532,25033..25548))] [gbkey=CDS]
Sequence

ATGCACACACTCACCATTGTAAGGATTAGTCCTCAAAAGCATATTTTCAACGAGTTCTGT
GAGTTCAAAATGAAACATGTTAGAATTGAGATGGGTACCAAAAGGGGCTTCAATGTGAAG
GTGATCAAAACTGAGGTGGTGGCAGCATCGTTGCCAATGCAAGAGCATTGGCTACCACAG
TCAAATCTTGATTTGCTCTTGCCTCCAATGGACGTTGGGGTTTTCTTTTGTTACCAGAAC
CCCATTATTTCTGGGATGCCAAAGTATTCATTTGGGTCAATGGTCAAAGTTCTAAAGGTT
TCTTTGGCTGAAACCTTGGTTTCCTATTATGCATTTGCAGGGGAGTTAGTTCAGAACCTT
GCTGGAGAGCCTGAAATTCTCTGCAACAATGCCGGAGTCAATTTCACAGAAGCTTGGGCT
GATATAGAGCTCAAAGAAATTAACTTGTATAATCCAGATGAAAGCATAGAGGGTAAGCTT
GTACCAAAGAAGAATCACGGTGTACTAGCCGTTCAGGCTACACAACTCAAATGTGGAGGA
ATAGTGGTGGCTTGTACATTTGATCATAGAGTTGCTGATGCTTATTCAACCAACATGTTT
CTCGTATCATGGGCTGAAATAGCTCAGTCCAAACCACTCTCTCAGCTCCCATCTTTCCGA
CGTTCCTTTCTTTCTCCACGGCGTCCCTCCCACTACGATCCCTTGGTAATAGACAGCATG
TACATACCTATCTCTGCCCTGAAACAAGAGACACGTGCTGTCACAAATATTGATGATGAT
GAACAAGTTATAAGTAGAATTTACTATGTCAAGGCTGAAGAAATCAGCCGCCTCCAATCA
TTGGCAAATAATTGTAATAACGACATGATTAGCACAAAATTCCACAGGTTTACTAAGCTT
GAAACATTCAGTGCTTTCCTATGGAAAACTATAGCCAATGGGATGGGGGAAAATAGTACT
CGTAATTACGAGAACTTCAGGTTTGGGATTGTGGTTAATGGCAGGAGTAGATTGAGCGAC
GGAGTTGAAGAACAAGCCAAGGTACTAAAAGGGTATTTTGGGAATGTTCTTTCCACCCCA
TTTGGGGAGAAGAAAGTGGAGAAACTAAAGGAGAAACCTTTAAGTTGGGTAGCAAATGCA
GTTCATGAGTTTCTTGAACCTGCAAAAACTAAAGAACATTTTCTTGGGTTAATAAATTGG
GTGGAGGATCATCGTCCAGAACCAGCTTTAGCAAGAATCTACGCCACAAATGAAGATGCA
GTGGCGGTGGTGGTGTCGTCGGGGCAGCAGTTTCCGGTGGGGAAGATTGAATTTGGGTGG
GGAGAGCCAGTGTTTGGGTCGTATCATTTTCCATGGGAAGGGAAAGCAGGATATGTGATG
CCAATGCCGAGTCCTAAAGGAAATGGAGATTGGGTTGTTTATATGCACATGTTGAAATGG
CAGTTGGAATTGGTTGACGCTTCTGCGGCCAATATGTTCAAGCCCCTGACTGCAGATTAT
CTCAACTTGAAGTAA

Peptide Sequence

PEP ID

XP_016489688.1
PEP Infomation

PREDICTED: shikimate O-hydroxycinnamoyltransferase-like [Nicotiana tabacum]
Sequence

MHTLTIVRISPQKHIFNEFCEFKMKHVRIEMGTKRGFNVKVIKTEVVAASLPMQEHWLPQ
SNLDLLLPPMDVGVFFCYQNPIISGMPKYSFGSMVKVLKVSLAETLVSYYAFAGELVQNL
AGEPEILCNNAGVNFTEAWADIELKEINLYNPDESIEGKLVPKKNHGVLAVQATQLKCGG
IVVACTFDHRVADAYSTNMFLVSWAEIAQSKPLSQLPSFRRSFLSPRRPSHYDPLVIDSM
YIPISALKQETRAVTNIDDDEQVISRIYYVKAEEISRLQSLANNCNNDMISTKFHRFTKL
ETFSAFLWKTIANGMGENSTRNYENFRFGIVVNGRSRLSDGVEEQAKVLKGYFGNVLSTP
FGEKKVEKLKEKPLSWVANAVHEFLEPAKTKEHFLGLINWVEDHRPEPALARIYATNEDA
VAVVVSSGQQFPVGKIEFGWGEPVFGSYHFPWEGKAGYVMPMPSPKGNGDWVVYMHMLKW
QLELVDASAANMFKPLTADYLNLK

Transcript Sequence

Gene sequence data has not been registered.